Bill B's comments about Vitamin K, and this may be the factor to consider. In the past, common advice was to avoid Vitamin K at all costs -- eliminate from diet as much as possible, don't take supplements containing Vitamin K, etc.
The more recent school of thought is to include Vitamin K in your diet -- it does many other beneficial things for the body that you shouldn't be without - but keep track of your INRs and just adjust for the coagulant factors that Vitamin K is involved in. Having Vitamin K in your diet is also said to make it EASIER to maintain a stable INR.
I'm not sure the old studies considered effects of low vitamin K, or other factors (like pre-menopausal and post-menopausal bone loss), but it's my uneducated guess that keeping a stable diet that includes Vitamin K, and regularly testing INR to maintain a stable INR will probably NOT contribute to arterial calcification or bone loss. (I've been taking warfarin for nearly 20 years and am unaware of any issues like the ones you're asking about).