I have had the exact same problem. Got my 6mg filled, but the as to the accompanying 1mg dose:
"There is a problem with the prescription and the pharmacist needs to call your doctor."
Me: "Perhaps I could help. What is the question- seems the prescription is pretty straight forward."
Costco pharm: "Sorry, he needs to talk to your doctor. "
Well, rather than call my cardiologist, who wrote the prescription, and would have sorted them out, they called the Coumadin Clinic doctor who has not overseen my dosage, nor communicated with me in over 4 months.
It takes them 2 weeks to sort it out and boy did they sort it out. I get a text indicating that my 4mg warfarin is ready. 4mg???
So, the pharmacist, guided by his computer, got confused as to why I would need 1mg pills, when the dosage from an old Coumadin Clinic prescription says "Take 4mg per day." Never mind that I now take 6 to 6.5mg per day, as my dosage increased during my first several months of taking warfarin, as happens with most. So, being super knowledgeable about such things, the Coumadin Clinic, not having any data or communication from me in 4 months, instructed them to change my 1mg prescription to 4mg. Good thing that they just didn't as the patient, because only "doctors" know answers to these complex questions.
When you get the Coumadin Clinic and the pharmacist communicating with each other to sort things out, it can sometimes be like these two trying to figure out your correct dosage and prescription: